STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
scpep1Carboxypeptidase; Belongs to the peptidase S10 family. (456 aa)    
Predicted Functional Partners:
LOC109519212
Uncharacterized protein.
      
 0.583
neu1
Neuraminidase 1.
   
 0.577
LOC109523341
Galactosidase, beta 1-like; Belongs to the glycosyl hydrolase 35 family.
   
 0.479
glb1
Beta-galactosidase.
   
 0.479
Bod1l1
Uncharacterized protein.
   
 0.475
LOC109532041
Biorientation of chromosomes in cell division 1.
   
 0.475
glb1l2
Beta-1,3-glucuronyltransferase 1 (glucuronosyltransferase P) b.
   
 0.475
ahdc1
AT hook, DNA binding motif, containing 1.
      
 0.471
psma5
Proteasome subunit alpha type.
      
 0.470
rasl10a
RAS-like, family 10, member A.
    
 0.433
Your Current Organism:
Hippocampus comes
NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.