STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC109524885HIT domain-containing protein. (250 aa)    
Predicted Functional Partners:
taf1b
TATA box binding protein (Tbp)-associated factor, RNA polymerase I, B.
    
 0.662
fam20c
Fam20C domain-containing protein.
      
 0.567
LOC109515828
Germ cell nuclear acidic peptidase.
    
 0.555
mnat1
MNAT1 component of CDK activating kinase.
    
 0.514
rrn3
RRN3 homolog, RNA polymerase I transcription factor.
    
 0.496
hmgcr
3-hydroxy-3-methylglutaryl coenzyme A reductase.
      
 0.466
LOC109525561
3-hydroxy-3-methylglutaryl coenzyme A reductase.
      
 0.466
dmac2l
Distal membrane arm assembly complex 2 like.
   
    0.459
msmo1
Methylsterol monooxygenase 1; Belongs to the sterol desaturase family.
  
  
 0.457
LOC109520867
TATA box binding protein like 2.
    
 0.453
Your Current Organism:
Hippocampus comes
NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse
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