STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC109507949Cone-rod homeobox. (295 aa)    
Predicted Functional Partners:
NR2E3
Nuclear receptor subfamily 2 group E member 3.
   
 
 0.652
LOC109532246
Neural retina leucine zipper.
    
 
 0.574
LOC109531321
Nuclear receptor subfamily 1, group D, member 4a.
    
 
 0.571
LOC109531343
Uncharacterized protein.
    
 
 0.478
LOC109522440
Retinoic acid receptor, gamma b.
    
 
 0.478
tnpo3
Transportin 3.
      
 0.471
neurod1
Neuronal differentiation 1.
   
  
 0.450
LOC109518279
Thyroid hormone receptor beta.
   
 
 0.417
LOC109507685
Thyroid hormone receptor beta.
   
 
 0.417
nr2e1
Nuclear receptor subfamily 2, group E, member 1.
   
 
 0.409
Your Current Organism:
Hippocampus comes
NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.