dclk1 protein (Hippocampus comes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

dclk1

Doublecortin-like kinase 1a. (711 aa)

Predicted Functional Partners:

ENSHCOP00000000872

0.762

LOC109521377

0.762

cenpi

0.762

ENSHCOP00000017729

0.762

ENSHCOP00000018838

0.762

LOC109531637

0.762

tube1

0.762

ENSHCOP00000025525

0.762

LOC109527287

0.762

dcx

0.646

Your Current Organism:

Hippocampus comes

NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSHCOP00000000872	ENSHCOP00000025525	ENSHCOP00000000872	ENSHCOP00000025525	Tubulin domain-containing protein.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	0.949
ENSHCOP00000000872	dclk1	ENSHCOP00000000872	ENSHCOP00000021776	Tubulin domain-containing protein.	Doublecortin-like kinase 1a.	0.762
ENSHCOP00000017729	ENSHCOP00000025525	ENSHCOP00000017729	ENSHCOP00000025525	Tubulin domain-containing protein.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	0.949
ENSHCOP00000017729	dclk1	ENSHCOP00000017729	ENSHCOP00000021776	Tubulin domain-containing protein.	Doublecortin-like kinase 1a.	0.762
ENSHCOP00000018838	ENSHCOP00000025525	ENSHCOP00000018838	ENSHCOP00000025525	Tubulin domain-containing protein.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	0.949
ENSHCOP00000018838	dclk1	ENSHCOP00000018838	ENSHCOP00000021776	Tubulin domain-containing protein.	Doublecortin-like kinase 1a.	0.762
ENSHCOP00000018838	dcx	ENSHCOP00000018838	ENSHCOP00000000889	Tubulin domain-containing protein.	Uncharacterized protein.	0.611
ENSHCOP00000025525	ENSHCOP00000000872	ENSHCOP00000025525	ENSHCOP00000000872	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	Tubulin domain-containing protein.	0.949
ENSHCOP00000025525	ENSHCOP00000017729	ENSHCOP00000025525	ENSHCOP00000017729	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	Tubulin domain-containing protein.	0.949
ENSHCOP00000025525	ENSHCOP00000018838	ENSHCOP00000025525	ENSHCOP00000018838	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	Tubulin domain-containing protein.	0.949
ENSHCOP00000025525	LOC109527287	ENSHCOP00000025525	ENSHCOP00000028291	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	Tubulin domain-containing protein.	0.949
ENSHCOP00000025525	LOC109531637	ENSHCOP00000025525	ENSHCOP00000023646	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.900
ENSHCOP00000025525	dclk1	ENSHCOP00000025525	ENSHCOP00000021776	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	Doublecortin-like kinase 1a.	0.762
ENSHCOP00000025525	dcx	ENSHCOP00000025525	ENSHCOP00000000889	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	Uncharacterized protein.	0.611
LOC109521377	dclk1	ENSHCOP00000017005	ENSHCOP00000021776	Tubulin, beta 2A class IIa; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	Doublecortin-like kinase 1a.	0.762
LOC109521377	dcx	ENSHCOP00000017005	ENSHCOP00000000889	Tubulin, beta 2A class IIa; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	Uncharacterized protein.	0.611
LOC109527287	ENSHCOP00000025525	ENSHCOP00000028291	ENSHCOP00000025525	Tubulin domain-containing protein.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	0.949
LOC109527287	dclk1	ENSHCOP00000028291	ENSHCOP00000021776	Tubulin domain-containing protein.	Doublecortin-like kinase 1a.	0.762
LOC109527287	dcx	ENSHCOP00000028291	ENSHCOP00000000889	Tubulin domain-containing protein.	Uncharacterized protein.	0.611
LOC109531637	ENSHCOP00000025525	ENSHCOP00000023646	ENSHCOP00000025525	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	0.900