STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
zswim7Zinc finger, SWIM-type containing 7. (141 aa)    
Predicted Functional Partners:
LOC109530022
SWIM-type zinc finger 7 associated protein 1.
    
 
 0.851
mrpl51
Mitochondrial ribosomal protein L51.
      
 0.562
fbxo38
F-box protein 38.
      
 0.471
sap30bp
SAP30 binding protein.
      
 0.471
mrpl48
Mitochondrial ribosomal protein L48.
      
 0.407
timm8b
Translocase of inner mitochondrial membrane 8 homolog B (yeast); Belongs to the small Tim family.
      
 0.407
ttc19
Tetratricopeptide repeat domain 19.
      
 0.407
rad17
RAD17 checkpoint clamp loader component.
      
 0.400
Your Current Organism:
Hippocampus comes
NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.