STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC109508100Uncharacterized protein. (221 aa)    
Predicted Functional Partners:
chmp7
Charged multivesicular body protein 7.
    
 0.978
pdcd6ip
Programmed cell death 6 interacting protein.
   
 0.970
chmp3
Charged multivesicular body protein 3.
   
 0.937
chmp2a
Charged multivesicular body protein 2A.
   
 0.928
chmp6
Charged multivesicular body protein 6.
    
0.925
ptpn23
Protein tyrosine phosphatase, non-receptor type 23, a.
   
 0.871
ist1
IST1 factor associated with ESCRT-III.
    
 0.861
chmp5
Charged multivesicular body protein 5b.
  
 0.839
snf8
Vacuolar-sorting protein SNF8; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family.
    
 0.838
LOC109520459
Charged multivesicular body protein 5a.
  
0.817
Your Current Organism:
Hippocampus comes
NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse
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