STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vmp1Vacuole membrane protein 1. (405 aa)    
Predicted Functional Partners:
becn1
Beclin 1, autophagy related.
    
 0.968
tp53inp2
Uncharacterized protein.
     
 0.919
atg12
Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.
      
 0.686
atg5
Autophagy protein 5; Involved in autophagic vesicle formation.
      
 0.637
Atg7
ATG7_N domain-containing protein.
   
  
 0.630
ei24
EI24 autophagy associated transmembrane protein.
      
 0.621
atg3
Autophagy-related protein 3.
   
  
 0.615
ENSHCOP00000012552
Uncharacterized protein.
      
 0.609
tmem41b
Transmembrane protein 41B.
    
 
 0.595
atg13
Autophagy-related protein 13; Belongs to the ATG13 family. Metazoan subfamily.
      
 0.593
Your Current Organism:
Hippocampus comes
NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.