STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC109531184Serpin peptidase inhibitor, clade H (heat shock protein 47), member 1a; Belongs to the serpin family. (439 aa)    
Predicted Functional Partners:
COL26A1
Collagen type XXVI alpha 1 chain.
    
 0.625
ppic
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
   
 0.603
ppib
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
   
 0.585
col6a1
Collagen, type VI, alpha 1.
   
 0.545
LOC109532378
Peptidylprolyl isomerase.
   
 
 0.542
LOC109524031
Peptidylprolyl isomerase.
   
 
 0.542
crtap
Cartilage associated protein.
   
 
 0.514
p3h4
Prolyl 3-hydroxylase family member 4 (non-enzymatic).
   
 
 0.514
emid1
EMI domain-containing protein.
    
 0.514
ENSHCOP00000020211
VWFA domain-containing protein.
    
 0.494
Your Current Organism:
Hippocampus comes
NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse
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