EGFLAM protein (Hippocampus comes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EGFLAM

EGF like, fibronectin type III and laminin G domains. (949 aa)

Predicted Functional Partners:

LOC109515023

0.858

DAG1

0.858

lrit3

0.677

rpl23a

0.657

LOC109517626

0.656

katnal2

0.643

rplp0

0.640

rpl26l1

0.633

rpl14

0.630

rps27a

0.625

Your Current Organism:

Hippocampus comes

NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DAG1	EGFLAM	ENSHCOP00000011457	ENSHCOP00000024690	Dystroglycan 1.	EGF like, fibronectin type III and laminin G domains.	0.858
DAG1	LOC109515023	ENSHCOP00000011457	ENSHCOP00000008580	Dystroglycan 1.	Peptidase S72 domain-containing protein.	0.902
EGFLAM	DAG1	ENSHCOP00000024690	ENSHCOP00000011457	EGF like, fibronectin type III and laminin G domains.	Dystroglycan 1.	0.858
EGFLAM	LOC109515023	ENSHCOP00000024690	ENSHCOP00000008580	EGF like, fibronectin type III and laminin G domains.	Peptidase S72 domain-containing protein.	0.858
EGFLAM	LOC109517626	ENSHCOP00000024690	ENSHCOP00000023499	EGF like, fibronectin type III and laminin G domains.	Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.	0.656
EGFLAM	katnal2	ENSHCOP00000024690	ENSHCOP00000004835	EGF like, fibronectin type III and laminin G domains.	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	0.643
EGFLAM	lrit3	ENSHCOP00000024690	ENSHCOP00000021693	EGF like, fibronectin type III and laminin G domains.	Info leucine-rich repeat, immunoglobulin-like and transmembrane domains 3a.	0.677
EGFLAM	rpl14	ENSHCOP00000024690	ENSHCOP00000028174	EGF like, fibronectin type III and laminin G domains.	Ribosomal protein L14.	0.630
EGFLAM	rpl23a	ENSHCOP00000024690	ENSHCOP00000006196	EGF like, fibronectin type III and laminin G domains.	Ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family.	0.657
EGFLAM	rpl26l1	ENSHCOP00000024690	ENSHCOP00000018876	EGF like, fibronectin type III and laminin G domains.	Ribosomal protein L26.	0.633
EGFLAM	rplp0	ENSHCOP00000024690	ENSHCOP00000009355	EGF like, fibronectin type III and laminin G domains.	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	0.640
EGFLAM	rps27a	ENSHCOP00000024690	ENSHCOP00000016034	EGF like, fibronectin type III and laminin G domains.	Ribosomal protein S27a.	0.625
LOC109515023	DAG1	ENSHCOP00000008580	ENSHCOP00000011457	Peptidase S72 domain-containing protein.	Dystroglycan 1.	0.902
LOC109515023	EGFLAM	ENSHCOP00000008580	ENSHCOP00000024690	Peptidase S72 domain-containing protein.	EGF like, fibronectin type III and laminin G domains.	0.858
LOC109517626	EGFLAM	ENSHCOP00000023499	ENSHCOP00000024690	Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.	EGF like, fibronectin type III and laminin G domains.	0.656
katnal2	EGFLAM	ENSHCOP00000004835	ENSHCOP00000024690	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	EGF like, fibronectin type III and laminin G domains.	0.643
katnal2	rps27a	ENSHCOP00000004835	ENSHCOP00000016034	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	Ribosomal protein S27a.	0.838
lrit3	EGFLAM	ENSHCOP00000021693	ENSHCOP00000024690	Info leucine-rich repeat, immunoglobulin-like and transmembrane domains 3a.	EGF like, fibronectin type III and laminin G domains.	0.677
lrit3	rps27a	ENSHCOP00000021693	ENSHCOP00000016034	Info leucine-rich repeat, immunoglobulin-like and transmembrane domains 3a.	Ribosomal protein S27a.	0.553
rpl14	EGFLAM	ENSHCOP00000028174	ENSHCOP00000024690	Ribosomal protein L14.	EGF like, fibronectin type III and laminin G domains.	0.630