ccdc9b protein (Hippocampus comes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ccdc9b

Uncharacterized protein. (538 aa)

Predicted Functional Partners:

LOC109511090

0.492

wdr18

0.467

MPZL2

0.427

vps18

0.405

Your Current Organism:

Hippocampus comes

NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC109511090	ccdc9b	ENSHCOP00000026236	ENSHCOP00000026594	Uncharacterized protein.	Uncharacterized protein.	0.492
MPZL2	ccdc9b	ENSHCOP00000011078	ENSHCOP00000026594	Myelin protein zero like 2.	Uncharacterized protein.	0.427
ccdc9b	LOC109511090	ENSHCOP00000026594	ENSHCOP00000026236	Uncharacterized protein.	Uncharacterized protein.	0.492
ccdc9b	MPZL2	ENSHCOP00000026594	ENSHCOP00000011078	Uncharacterized protein.	Myelin protein zero like 2.	0.427
ccdc9b	vps18	ENSHCOP00000026594	ENSHCOP00000018089	Uncharacterized protein.	VPS18 core subunit of CORVET and HOPS complexes.	0.405
ccdc9b	wdr18	ENSHCOP00000026594	ENSHCOP00000016675	Uncharacterized protein.	WD repeat domain 18.	0.467
vps18	ccdc9b	ENSHCOP00000018089	ENSHCOP00000026594	VPS18 core subunit of CORVET and HOPS complexes.	Uncharacterized protein.	0.405
wdr18	ccdc9b	ENSHCOP00000016675	ENSHCOP00000026594	WD repeat domain 18.	Uncharacterized protein.	0.467