STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSHCOP00000027209Uncharacterized protein. (1280 aa)    
Predicted Functional Partners:
cntn2
Contactin 2.
   
0.663
ENSHCOP00000008469
Tyrosine-protein phosphatase domain-containing protein.
    
 0.591
LOC109529441
Uncharacterized protein.
    
 0.591
ptprg
Carbonic anhydrase XVI b.
    
 0.591
nrp1
Neuropilin; Belongs to the neuropilin family.
    
 0.552
cntn1
Contactin 1b.
    
0.524
LOC109521478
Contactin 3b.
    
0.524
LOC109521503
Contactin 4.
    
0.524
LOC109526659
Contactin 3a, tandem duplicate 2.
    
0.524
LOC109526651
Contactin 3a, tandem duplicate 1.
    
0.524
Your Current Organism:
Hippocampus comes
NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse
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