STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC109522440Retinoic acid receptor, gamma b. (501 aa)    
Predicted Functional Partners:
LOC109532369
Uncharacterized protein.
   
0.672
ncor2
Nuclear receptor corepressor 2.
    
 0.633
ncor1
Nuclear receptor corepressor 1.
    
 0.633
LOC109517612
Uncharacterized protein.
   
0.599
LOC109530282
Retinoid X receptor, alpha a.
   
0.599
RXRB
Retinoid X receptor beta.
   
0.599
LOC109522595
Nuclear receptor subfamily 1, group D, member 4b.
   
0.543
nr1d2
Nuclear receptor subfamily 1, group D, member 2a.
   
0.543
LOC109507949
Cone-rod homeobox.
    
 
 0.478
nrip1
Nuclear receptor interacting protein 1b.
    
 0.470
Your Current Organism:
Hippocampus comes
NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.