clybl protein (Hippocampus comes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

clybl

Citrate lyase beta like. (338 aa)

Predicted Functional Partners:

Sugct

0.881

glrx3

0.657

hspa5

0.641

hspa9

0.641

grpel1

0.625

LOC109516095

0.606

LOC109515733

0.606

LOC109517862

0.606

CLPB

0.581

hsp90ab1

0.540

Your Current Organism:

Hippocampus comes

NCBI taxonomy Id: 109280
Other names: H. comes, tiger tail seahorse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CLPB	LOC109515733	ENSHCOP00000024615	ENSHCOP00000019865	ClpB homolog, mitochondrial AAA ATPase chaperonin.	Heat shock protein 4b.	0.820
CLPB	LOC109516095	ENSHCOP00000024615	ENSHCOP00000016484	ClpB homolog, mitochondrial AAA ATPase chaperonin.	Heat shock protein 4 like.	0.820
CLPB	LOC109517862	ENSHCOP00000024615	ENSHCOP00000025744	ClpB homolog, mitochondrial AAA ATPase chaperonin.	Heat shock protein 4a.	0.820
CLPB	clybl	ENSHCOP00000024615	ENSHCOP00000028152	ClpB homolog, mitochondrial AAA ATPase chaperonin.	Citrate lyase beta like.	0.581
CLPB	grpel1	ENSHCOP00000024615	ENSHCOP00000025656	ClpB homolog, mitochondrial AAA ATPase chaperonin.	GrpE protein homolog; Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner; Belongs to the GrpE family.	0.990
CLPB	hsp90ab1	ENSHCOP00000024615	ENSHCOP00000003821	ClpB homolog, mitochondrial AAA ATPase chaperonin.	Heat shock protein 90, alpha (cytosolic), class B member 1.	0.676
CLPB	hspa5	ENSHCOP00000024615	ENSHCOP00000001935	ClpB homolog, mitochondrial AAA ATPase chaperonin.	Heat shock protein 5; Belongs to the heat shock protein 70 family.	0.804
CLPB	hspa9	ENSHCOP00000024615	ENSHCOP00000018775	ClpB homolog, mitochondrial AAA ATPase chaperonin.	Heat shock protein 9; Belongs to the heat shock protein 70 family.	0.908
LOC109515733	CLPB	ENSHCOP00000019865	ENSHCOP00000024615	Heat shock protein 4b.	ClpB homolog, mitochondrial AAA ATPase chaperonin.	0.820
LOC109515733	LOC109516095	ENSHCOP00000019865	ENSHCOP00000016484	Heat shock protein 4b.	Heat shock protein 4 like.	0.414
LOC109515733	LOC109517862	ENSHCOP00000019865	ENSHCOP00000025744	Heat shock protein 4b.	Heat shock protein 4a.	0.901
LOC109515733	clybl	ENSHCOP00000019865	ENSHCOP00000028152	Heat shock protein 4b.	Citrate lyase beta like.	0.606
LOC109515733	grpel1	ENSHCOP00000019865	ENSHCOP00000025656	Heat shock protein 4b.	GrpE protein homolog; Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner; Belongs to the GrpE family.	0.824
LOC109515733	hsp90ab1	ENSHCOP00000019865	ENSHCOP00000003821	Heat shock protein 4b.	Heat shock protein 90, alpha (cytosolic), class B member 1.	0.721
LOC109515733	hspa5	ENSHCOP00000019865	ENSHCOP00000001935	Heat shock protein 4b.	Heat shock protein 5; Belongs to the heat shock protein 70 family.	0.833
LOC109515733	hspa9	ENSHCOP00000019865	ENSHCOP00000018775	Heat shock protein 4b.	Heat shock protein 9; Belongs to the heat shock protein 70 family.	0.860
LOC109516095	CLPB	ENSHCOP00000016484	ENSHCOP00000024615	Heat shock protein 4 like.	ClpB homolog, mitochondrial AAA ATPase chaperonin.	0.820
LOC109516095	LOC109515733	ENSHCOP00000016484	ENSHCOP00000019865	Heat shock protein 4 like.	Heat shock protein 4b.	0.414
LOC109516095	LOC109517862	ENSHCOP00000016484	ENSHCOP00000025744	Heat shock protein 4 like.	Heat shock protein 4a.	0.415
LOC109516095	clybl	ENSHCOP00000016484	ENSHCOP00000028152	Heat shock protein 4 like.	Citrate lyase beta like.	0.606