STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D2ZPV5Uncharacterized protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. (534 aa)    
Predicted Functional Partners:
A0A0D3B3W0
Uncharacterized protein.
  
    0.799
A0A0D3ARN3
Uncharacterized protein.
    
 
 0.619
A0A0D3ANV8
BPL/LPL catalytic domain-containing protein.
  
  
 0.572
A0A0D3E1V4
BPL/LPL catalytic domain-containing protein.
  
  
 0.572
A0A0D3B9P7
TRUD domain-containing protein.
   
  
 0.543
A0A0D3E4N6
RF_PROK_I domain-containing protein.
  
  
 0.530
A0A0D3CR39
Uncharacterized protein.
      
 0.521
A0A0D3DBV0
Uncharacterized protein.
     
 0.518
A0A0D3C251
Uncharacterized protein.
     
 0.517
A0A0D3ARA1
DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'.
  
 0.510
Your Current Organism:
Brassica oleracea
NCBI taxonomy Id: 109376
Other names: B. oleracea var. oleracea, Brassica oleracea subsp. oleracea, Brassica oleracea var. oleracea
Server load: medium (44%) [HD]