A0A0D3A4L7 protein (Brassica oleracea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0D3A4L7

Elongation factor Tu. (721 aa)

Predicted Functional Partners:

A0A0D3CIR5

0.988

A0A0D3CAV0

0.987

A0A0D3B1V6

0.984

A0A0D2ZUI3

0.976

A0A0D3A1Y6

0.976

A0A0D3ALM2

0.976

A0A0D3B225

0.976

A0A0D3BS55

0.976

A0A0D3C450

0.976

EFTS

0.974

Your Current Organism:

Brassica oleracea

NCBI taxonomy Id: 109376
Other names: B. oleracea var. oleracea, Brassica oleracea subsp. oleracea, Brassica oleracea var. oleracea

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0D2ZUI3	A0A0D3A1Y6	A0A0D2ZUI3	A0A0D3A1Y6	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Uncharacterized protein.	0.995
A0A0D2ZUI3	A0A0D3A4L7	A0A0D2ZUI3	A0A0D3A4L7	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Elongation factor Tu.	0.976
A0A0D2ZUI3	A0A0D3ALM2	A0A0D2ZUI3	A0A0D3ALM2	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Uncharacterized protein.	0.995
A0A0D2ZUI3	A0A0D3B1V6	A0A0D2ZUI3	A0A0D3B1V6	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Uncharacterized protein.	0.996
A0A0D2ZUI3	A0A0D3B225	A0A0D2ZUI3	A0A0D3B225	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	0.901
A0A0D2ZUI3	A0A0D3BS55	A0A0D2ZUI3	A0A0D3BS55	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Uncharacterized protein.	0.995
A0A0D2ZUI3	A0A0D3C450	A0A0D2ZUI3	A0A0D3C450	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Uncharacterized protein.	0.995
A0A0D2ZUI3	A0A0D3CAV0	A0A0D2ZUI3	A0A0D3CAV0	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.996
A0A0D2ZUI3	A0A0D3CIR5	A0A0D2ZUI3	A0A0D3CIR5	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Uncharacterized protein.	0.996
A0A0D2ZUI3	EFTS	A0A0D2ZUI3	A0A0D3A3L4	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	0.860
A0A0D3A1Y6	A0A0D2ZUI3	A0A0D3A1Y6	A0A0D2ZUI3	Uncharacterized protein.	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	0.995
A0A0D3A1Y6	A0A0D3A4L7	A0A0D3A1Y6	A0A0D3A4L7	Uncharacterized protein.	Elongation factor Tu.	0.976
A0A0D3A1Y6	A0A0D3ALM2	A0A0D3A1Y6	A0A0D3ALM2	Uncharacterized protein.	Uncharacterized protein.	0.947
A0A0D3A1Y6	A0A0D3B1V6	A0A0D3A1Y6	A0A0D3B1V6	Uncharacterized protein.	Uncharacterized protein.	0.997
A0A0D3A1Y6	A0A0D3B225	A0A0D3A1Y6	A0A0D3B225	Uncharacterized protein.	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	0.995
A0A0D3A1Y6	A0A0D3BS55	A0A0D3A1Y6	A0A0D3BS55	Uncharacterized protein.	Uncharacterized protein.	0.998
A0A0D3A1Y6	A0A0D3C450	A0A0D3A1Y6	A0A0D3C450	Uncharacterized protein.	Uncharacterized protein.	0.998
A0A0D3A1Y6	A0A0D3CAV0	A0A0D3A1Y6	A0A0D3CAV0	Uncharacterized protein.	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.997
A0A0D3A1Y6	A0A0D3CIR5	A0A0D3A1Y6	A0A0D3CIR5	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A0D3A1Y6	EFTS	A0A0D3A1Y6	A0A0D3A3L4	Uncharacterized protein.	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	0.945