A0A0D3AJW4 protein (Brassica oleracea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0D3AJW4

Uncharacterized protein. (258 aa)

Predicted Functional Partners:

A0A0D3AJL3

0.500

A0A0D2ZZM4

0.440

A0A0D3BIK8

0.438

A0A0D3A083

0.424

A0A0D3ANL6

0.413

A0A0D3AS79

0.404

A0A0D3CBC7

0.402

Your Current Organism:

Brassica oleracea

NCBI taxonomy Id: 109376
Other names: B. oleracea var. oleracea, Brassica oleracea subsp. oleracea, Brassica oleracea var. oleracea

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D2ZZM4	A0A0D3AJW4	Uncharacterized protein.	Uncharacterized protein.	0.440
A0A0D3A083	A0A0D3AJW4	Uncharacterized protein.	Uncharacterized protein.	0.424
A0A0D3AJL3	A0A0D3AJW4	Uncharacterized protein.	Uncharacterized protein.	0.500
A0A0D3AJL3	A0A0D3CBC7	Uncharacterized protein.	Uncharacterized protein.	0.511
A0A0D3AJW4	A0A0D2ZZM4	Uncharacterized protein.	Uncharacterized protein.	0.440
A0A0D3AJW4	A0A0D3A083	Uncharacterized protein.	Uncharacterized protein.	0.424
A0A0D3AJW4	A0A0D3AJL3	Uncharacterized protein.	Uncharacterized protein.	0.500
A0A0D3AJW4	A0A0D3ANL6	Uncharacterized protein.	Uncharacterized protein.	0.413
A0A0D3AJW4	A0A0D3AS79	Uncharacterized protein.	Uncharacterized protein.	0.404
A0A0D3AJW4	A0A0D3BIK8	Uncharacterized protein.	Uncharacterized protein.	0.438
A0A0D3AJW4	A0A0D3CBC7	Uncharacterized protein.	Uncharacterized protein.	0.402
A0A0D3ANL6	A0A0D3AJW4	Uncharacterized protein.	Uncharacterized protein.	0.413
A0A0D3AS79	A0A0D3AJW4	Uncharacterized protein.	Uncharacterized protein.	0.404
A0A0D3BIK8	A0A0D3AJW4	Uncharacterized protein.	Uncharacterized protein.	0.438
A0A0D3CBC7	A0A0D3AJL3	Uncharacterized protein.	Uncharacterized protein.	0.511
A0A0D3CBC7	A0A0D3AJW4	Uncharacterized protein.	Uncharacterized protein.	0.402