A0A0D3AKI6 protein (Brassica oleracea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0D3AKI6

Uncharacterized protein. (474 aa)

Predicted Functional Partners:

A0A0D3BXQ9

0.808

A0A0D3BXR0

0.808

A0A0D3C0Y4

0.808

A0A0D3DTC0

0.808

A0A0D3DTC3

0.808

A0A0D3DW97

0.808

A0A0D3CB62

0.798

A0A0D3AE84

0.747

A0A0D3APW8

0.747

A0A0D3B589

0.747

Your Current Organism:

Brassica oleracea

NCBI taxonomy Id: 109376
Other names: B. oleracea var. oleracea, Brassica oleracea subsp. oleracea, Brassica oleracea var. oleracea

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D3AE84	A0A0D3AKI6	Uncharacterized protein.	Uncharacterized protein.	0.747
A0A0D3AE84	A0A0D3BXQ9	Uncharacterized protein.	Uncharacterized protein.	0.891
A0A0D3AE84	A0A0D3BXR0	Uncharacterized protein.	Uncharacterized protein.	0.891
A0A0D3AE84	A0A0D3C0Y4	Uncharacterized protein.	Uncharacterized protein.	0.891
A0A0D3AE84	A0A0D3CB62	Uncharacterized protein.	Uncharacterized protein.	0.926
A0A0D3AE84	A0A0D3DTC0	Uncharacterized protein.	Uncharacterized protein.	0.891
A0A0D3AE84	A0A0D3DTC3	Uncharacterized protein.	Uncharacterized protein.	0.891
A0A0D3AE84	A0A0D3DW97	Uncharacterized protein.	Uncharacterized protein.	0.891
A0A0D3AKI6	A0A0D3AE84	Uncharacterized protein.	Uncharacterized protein.	0.747
A0A0D3AKI6	A0A0D3APW8	Uncharacterized protein.	Uncharacterized protein.	0.747
A0A0D3AKI6	A0A0D3B589	Uncharacterized protein.	Uncharacterized protein.	0.747
A0A0D3AKI6	A0A0D3BXQ9	Uncharacterized protein.	Uncharacterized protein.	0.808
A0A0D3AKI6	A0A0D3BXR0	Uncharacterized protein.	Uncharacterized protein.	0.808
A0A0D3AKI6	A0A0D3C0Y4	Uncharacterized protein.	Uncharacterized protein.	0.808
A0A0D3AKI6	A0A0D3CB62	Uncharacterized protein.	Uncharacterized protein.	0.798
A0A0D3AKI6	A0A0D3DTC0	Uncharacterized protein.	Uncharacterized protein.	0.808
A0A0D3AKI6	A0A0D3DTC3	Uncharacterized protein.	Uncharacterized protein.	0.808
A0A0D3AKI6	A0A0D3DW97	Uncharacterized protein.	Uncharacterized protein.	0.808
A0A0D3APW8	A0A0D3AKI6	Uncharacterized protein.	Uncharacterized protein.	0.747
A0A0D3APW8	A0A0D3BXQ9	Uncharacterized protein.	Uncharacterized protein.	0.891