STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D3AL96WD_REPEATS_REGION domain-containing protein. (419 aa)    
Predicted Functional Partners:
A0A0D3EHY9
Uncharacterized protein.
   
 0.951
A0A0D3BF18
WD_REPEATS_REGION domain-containing protein.
   
 
 0.943
A0A0D3B341
Histone acetyltransferase type B catalytic subunit.
   
 0.942
A0A0D3EBV0
N-acetyltransferase domain-containing protein.
   
 0.942
A0A0D3C1G7
Uncharacterized protein.
    
 0.924
A0A0D3DZY8
Uncharacterized protein.
    
 0.924
A0A0D3C755
Uncharacterized protein.
    
 0.916
A0A0D3DZ92
Uncharacterized protein.
    
 0.916
A0A0D3AFM0
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
   
 0.892
A0A0D3B2L1
Uncharacterized protein; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 0.891
Your Current Organism:
Brassica oleracea
NCBI taxonomy Id: 109376
Other names: B. oleracea var. oleracea, Brassica oleracea subsp. oleracea, Brassica oleracea var. oleracea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.