STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D3B009Uncharacterized protein. (170 aa)    
Predicted Functional Partners:
A0A0D3A2S9
Uncharacterized protein.
    
 0.977
A0A0D3D0H9
Peptidase_M1 domain-containing protein.
    
 0.977
A0A0D3DUD8
Uncharacterized protein; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.
   
 0.970
A0A0D3BM46
MAT1 domain-containing protein.
    
 0.965
A0A0D3C7N5
TAF domain-containing protein.
   
 0.965
A0A0D3DIY0
TAF domain-containing protein.
   
 0.965
A0A0D3A7F5
RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.
    
 0.964
A0A0D3AXR8
Uncharacterized protein.
    
 0.964
A0A0D3BN16
Uncharacterized protein.
    
 0.964
A0A0D3CQW0
Uncharacterized protein.
    
 0.964
Your Current Organism:
Brassica oleracea
NCBI taxonomy Id: 109376
Other names: B. oleracea var. oleracea, Brassica oleracea subsp. oleracea, Brassica oleracea var. oleracea
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