STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D3B1N9RING-type domain-containing protein. (336 aa)    
Predicted Functional Partners:
A0A0D3CP30
SER_THR_PHOSPHATASE domain-containing protein.
      
 0.591
A0A0D3D8T7
BZIP domain-containing protein.
      
 0.539
A0A0D3BRM6
Ubiquitin-like domain-containing protein.
    
 0.472
A0A0D3ACM2
Longin domain-containing protein; Belongs to the synaptobrevin family.
      
 0.443
A0A0D3BIL4
Uncharacterized protein.
      
 0.443
A0A0D3BIL5
Uncharacterized protein.
      
 0.443
A0A0D3C9T5
Uncharacterized protein.
      
 0.443
A0A0D3CE71
Uncharacterized protein.
      
 0.443
A0A0D3CE72
Uncharacterized protein.
      
 0.443
A0A0D3DP77
Uncharacterized protein; Belongs to the synaptobrevin family.
      
 0.443
Your Current Organism:
Brassica oleracea
NCBI taxonomy Id: 109376
Other names: B. oleracea var. oleracea, Brassica oleracea subsp. oleracea, Brassica oleracea var. oleracea
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