STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D3B333HTH myb-type domain-containing protein. (215 aa)    
Predicted Functional Partners:
A0A0D3EE20
Epimerase domain-containing protein.
      
 0.559
A0A0D3B6E2
HTH myb-type domain-containing protein.
  
 
 0.557
A0A0D2ZTD5
Uncharacterized protein.
    
 0.513
A0A0D3D340
Uncharacterized protein.
      
 0.469
A0A0D3E3B5
Uncharacterized protein.
      
 0.469
A0A0D3BMH2
Epimerase domain-containing protein.
      
 0.451
A0A0D3CDJ8
Epimerase domain-containing protein.
      
 0.451
A0A0D3A401
Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region.
   
  
 0.432
A0A0D3CXN0
Uncharacterized protein.
  
   
 0.415
A0A0D3CZ04
Alpha-1,4 glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.
      
 0.408
Your Current Organism:
Brassica oleracea
NCBI taxonomy Id: 109376
Other names: B. oleracea var. oleracea, Brassica oleracea subsp. oleracea, Brassica oleracea var. oleracea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.