A0A0D3B4R5 protein (Brassica oleracea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0D3B4R5

Uncharacterized protein; Belongs to the DEAD box helicase family. (652 aa)

Predicted Functional Partners:

A0A0D3DJ45

0.980

A0A0D3DYS2

0.980

A0A0D3AEG7

0.977

A0A0D2ZSE9

0.976

A0A0D3BLM2

0.976

A0A0D3E0A4

0.976

A0A0D3BEI7

0.967

A0A0D3D2W4

0.967

A0A0D3E3D8

0.967

A0A0D3CBT4

0.962

Your Current Organism:

Brassica oleracea

NCBI taxonomy Id: 109376
Other names: B. oleracea var. oleracea, Brassica oleracea subsp. oleracea, Brassica oleracea var. oleracea

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D2ZSE9	A0A0D3AEG7	Uncharacterized protein.	Small nuclear ribonucleoprotein G.	0.976
A0A0D2ZSE9	A0A0D3B4R5	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.976
A0A0D2ZSE9	A0A0D3BEI7	Uncharacterized protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.966
A0A0D2ZSE9	A0A0D3CBT4	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome.	0.978
A0A0D2ZSE9	A0A0D3D2W4	Uncharacterized protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.966
A0A0D2ZSE9	A0A0D3DJ45	Uncharacterized protein.	Tr-type G domain-containing protein.	0.986
A0A0D2ZSE9	A0A0D3DYS2	Uncharacterized protein.	Tr-type G domain-containing protein.	0.986
A0A0D2ZSE9	A0A0D3E3D8	Uncharacterized protein.	Sm domain-containing protein.	0.966
A0A0D3AEG7	A0A0D2ZSE9	Small nuclear ribonucleoprotein G.	Uncharacterized protein.	0.976
A0A0D3AEG7	A0A0D3B4R5	Small nuclear ribonucleoprotein G.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.977
A0A0D3AEG7	A0A0D3BEI7	Small nuclear ribonucleoprotein G.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.998
A0A0D3AEG7	A0A0D3BLM2	Small nuclear ribonucleoprotein G.	Uncharacterized protein.	0.976
A0A0D3AEG7	A0A0D3CBT4	Small nuclear ribonucleoprotein G.	Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome.	0.998
A0A0D3AEG7	A0A0D3D2W4	Small nuclear ribonucleoprotein G.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.998
A0A0D3AEG7	A0A0D3DJ45	Small nuclear ribonucleoprotein G.	Tr-type G domain-containing protein.	0.988
A0A0D3AEG7	A0A0D3DYS2	Small nuclear ribonucleoprotein G.	Tr-type G domain-containing protein.	0.988
A0A0D3AEG7	A0A0D3E0A4	Small nuclear ribonucleoprotein G.	TPR_REGION domain-containing protein.	0.976
A0A0D3AEG7	A0A0D3E3D8	Small nuclear ribonucleoprotein G.	Sm domain-containing protein.	0.998
A0A0D3B4R5	A0A0D2ZSE9	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.976
A0A0D3B4R5	A0A0D3AEG7	Uncharacterized protein; Belongs to the DEAD box helicase family.	Small nuclear ribonucleoprotein G.	0.977