STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D3B5L3Syntaxin-6_N domain-containing protein. (359 aa)    
Predicted Functional Partners:
A0A0D3AB31
Uncharacterized protein.
      
 0.536
A0A0D3AJT4
Peptidase A1 domain-containing protein; Belongs to the peptidase A1 family.
  
     0.503
A0A0D2ZZK4
Phytocyanin domain-containing protein.
  
     0.500
A0A0D3ALV5
FAS1 domain-containing protein.
  
     0.500
A0A0D3ALH0
PHD_Oberon domain-containing protein.
  
     0.492
A0A0D3B8I8
Uncharacterized protein.
  
     0.490
A0A0D3E899
Uncharacterized protein.
  
     0.487
A0A0D3B2Y8
Uncharacterized protein.
  
     0.485
A0A0D3B304
PHD_Oberon domain-containing protein.
  
     0.485
A0A0D3DSJ4
OVATE domain-containing protein.
  
     0.485
Your Current Organism:
Brassica oleracea
NCBI taxonomy Id: 109376
Other names: B. oleracea var. oleracea, Brassica oleracea subsp. oleracea, Brassica oleracea var. oleracea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.