STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D3B865HSF_DOMAIN domain-containing protein. (319 aa)    
Predicted Functional Partners:
A0A0D3D515
HTH cro/C1-type domain-containing protein.
   
  
 0.609
A0A0D3AHW2
AP2/ERF domain-containing protein.
    
 
 0.559
A0A0D3AZF4
Dof-type domain-containing protein.
    
 0.515
A0A0D3BTS1
C2H2-type domain-containing protein.
      
 0.487
A0A0D3CBU9
HMG box domain-containing protein.
      
 0.487
A0A0D3DI18
BES1_N domain-containing protein.
      
 0.487
A0A0D3DQG9
Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
      
 0.487
A0A0D3ADH8
AP2/ERF domain-containing protein.
      
 0.485
A0A0D3AEV6
PEROXIDASE_4 domain-containing protein; Belongs to the peroxidase family.
   
 0.462
A0A0D3BSU9
Uncharacterized protein; Belongs to the heat shock protein 70 family.
   
 0.415
Your Current Organism:
Brassica oleracea
NCBI taxonomy Id: 109376
Other names: B. oleracea var. oleracea, Brassica oleracea subsp. oleracea, Brassica oleracea var. oleracea
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