STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D3BD06Uncharacterized protein. (427 aa)    
Predicted Functional Partners:
A0A0D3BBX0
Uncharacterized protein.
  
     0.507
A0A0D3ACQ8
Uncharacterized protein.
  
     0.502
A0A0D3C1G7
Uncharacterized protein.
    
 
 0.502
A0A0D2ZWS8
E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.
  
     0.495
A0A0D3ECY1
Uncharacterized protein.
  
     0.492
A0A0D3EHL0
Uncharacterized protein.
  
     0.489
A0A0D3A4A3
Uncharacterized protein.
  
     0.462
A0A0D3CKC8
Uncharacterized protein.
  
     0.458
A0A0D3DF01
Uncharacterized protein.
  
     0.455
A0A0D3BB80
Uncharacterized protein.
  
     0.445
Your Current Organism:
Brassica oleracea
NCBI taxonomy Id: 109376
Other names: B. oleracea var. oleracea, Brassica oleracea subsp. oleracea, Brassica oleracea var. oleracea
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