STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D3BMY1Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Trm1 family. (100 aa)    
Predicted Functional Partners:
A0A0D3AJE5
WD_REPEATS_REGION domain-containing protein.
   
    0.772
A0A0D3EEY3
WD_REPEATS_REGION domain-containing protein.
   
    0.772
A0A0D3B9P7
TRUD domain-containing protein.
  
 
 0.730
A0A0D3AEP6
WD_REPEATS_REGION domain-containing protein.
   
    0.677
A0A0D3CLE6
Uncharacterized protein.
   
    0.677
A0A0D3DRN4
Uncharacterized protein.
   
 
 0.662
A0A0D3A0U5
tRNA-dihydrouridine(47) synthase [NAD(P)(+)].
   
 
 0.661
A0A0D3B7K3
Uncharacterized protein.
   
  
 0.644
A0A0D3B8H0
SAM_MT_TRM5_TYW2 domain-containing protein.
   
  
 0.642
A0A0D3B8H1
TYW3 domain-containing protein.
   
  
 0.642
Your Current Organism:
Brassica oleracea
NCBI taxonomy Id: 109376
Other names: B. oleracea var. oleracea, Brassica oleracea subsp. oleracea, Brassica oleracea var. oleracea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.