STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D3C3I0RBR-type E3 ubiquitin transferase. (510 aa)    
Predicted Functional Partners:
A0A0D3BRM6
Ubiquitin-like domain-containing protein.
    
  0.622
A0A0D3AHI9
HECT domain-containing protein.
   
 
 0.558
A0A0D3AZH5
HECT domain-containing protein.
   
 
 0.558
A0A0D3BJ86
HECT domain-containing protein.
   
 
 0.470
A0A0D3DIH0
Uncharacterized protein.
   
 
 0.470
A0A0D3DIH1
Uncharacterized protein.
   
 
 0.470
A0A0D3E7Q7
RING-type domain-containing protein.
     
 0.423
A0A0D3AK66
RING-type domain-containing protein.
    
 0.413
A0A0D3B242
RING-type domain-containing protein.
    
 0.413
A0A0D3EDS1
RING-type domain-containing protein.
    
 0.413
Your Current Organism:
Brassica oleracea
NCBI taxonomy Id: 109376
Other names: B. oleracea var. oleracea, Brassica oleracea subsp. oleracea, Brassica oleracea var. oleracea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.