A0A0D3C485 protein (Brassica oleracea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0D3C485

AA_permease_C domain-containing protein. (570 aa)

Predicted Functional Partners:

A0A0D3CKJ0

0.547

A0A0D3BB54

0.543

A0A0D3C246

0.448

A0A0D3AA40

0.445

A0A0D3BV01

0.445

A0A0D3E5K3

0.445

A0A0D3ADJ6

0.401

Your Current Organism:

Brassica oleracea

NCBI taxonomy Id: 109376
Other names: B. oleracea var. oleracea, Brassica oleracea subsp. oleracea, Brassica oleracea var. oleracea

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D3AA40	A0A0D3C485	Aa_trans domain-containing protein.	AA_permease_C domain-containing protein.	0.445
A0A0D3ADJ6	A0A0D3C485	Sm domain-containing protein.	AA_permease_C domain-containing protein.	0.401
A0A0D3BB54	A0A0D3C485	Uncharacterized protein.	AA_permease_C domain-containing protein.	0.543
A0A0D3BV01	A0A0D3C485	Aa_trans domain-containing protein.	AA_permease_C domain-containing protein.	0.445
A0A0D3C246	A0A0D3C485	AP2/ERF domain-containing protein.	AA_permease_C domain-containing protein.	0.448
A0A0D3C485	A0A0D3AA40	AA_permease_C domain-containing protein.	Aa_trans domain-containing protein.	0.445
A0A0D3C485	A0A0D3ADJ6	AA_permease_C domain-containing protein.	Sm domain-containing protein.	0.401
A0A0D3C485	A0A0D3BB54	AA_permease_C domain-containing protein.	Uncharacterized protein.	0.543
A0A0D3C485	A0A0D3BV01	AA_permease_C domain-containing protein.	Aa_trans domain-containing protein.	0.445
A0A0D3C485	A0A0D3C246	AA_permease_C domain-containing protein.	AP2/ERF domain-containing protein.	0.448
A0A0D3C485	A0A0D3CKJ0	AA_permease_C domain-containing protein.	Uncharacterized protein.	0.547
A0A0D3C485	A0A0D3E5K3	AA_permease_C domain-containing protein.	Aa_trans domain-containing protein.	0.445
A0A0D3CKJ0	A0A0D3C485	Uncharacterized protein.	AA_permease_C domain-containing protein.	0.547
A0A0D3E5K3	A0A0D3C485	Aa_trans domain-containing protein.	AA_permease_C domain-containing protein.	0.445