A0A0D3C6W5 protein (Brassica oleracea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0D3C6W5

Uncharacterized protein. (512 aa)

Predicted Functional Partners:

A0A0D3C704

0.597

A0A0D3B6F7

0.580

A0A0D3EF81

0.569

A0A0D3BE53

0.567

A0A0D3A1N8

0.566

A0A0D3BSF3

0.514

A0A0D3BGF4

0.509

A0A0D3CFL7

0.509

A0A0D3CI42

0.509

A0A0D3BSF4

0.507

Your Current Organism:

Brassica oleracea

NCBI taxonomy Id: 109376
Other names: B. oleracea var. oleracea, Brassica oleracea subsp. oleracea, Brassica oleracea var. oleracea

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D3A1N8	A0A0D3C6W5	Uncharacterized protein.	Uncharacterized protein.	0.566
A0A0D3B6F7	A0A0D3BE53	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	Smr domain-containing protein.	0.439
A0A0D3B6F7	A0A0D3BGF4	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	Uncharacterized protein.	0.666
A0A0D3B6F7	A0A0D3BSF3	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	Uncharacterized protein.	0.963
A0A0D3B6F7	A0A0D3C6W5	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	Uncharacterized protein.	0.580
A0A0D3B6F7	A0A0D3C704	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	Uncharacterized protein.	0.659
A0A0D3B6F7	A0A0D3CFL7	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	Uncharacterized protein.	0.666
A0A0D3B6F7	A0A0D3CI42	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	Uncharacterized protein.	0.666
A0A0D3B6F7	A0A0D3EF81	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	Uncharacterized protein.	0.948
A0A0D3BE53	A0A0D3B6F7	Smr domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	0.439
A0A0D3BE53	A0A0D3BGF4	Smr domain-containing protein.	Uncharacterized protein.	0.476
A0A0D3BE53	A0A0D3C6W5	Smr domain-containing protein.	Uncharacterized protein.	0.567
A0A0D3BE53	A0A0D3C704	Smr domain-containing protein.	Uncharacterized protein.	0.581
A0A0D3BE53	A0A0D3CFL7	Smr domain-containing protein.	Uncharacterized protein.	0.476
A0A0D3BE53	A0A0D3CI42	Smr domain-containing protein.	Uncharacterized protein.	0.476
A0A0D3BE53	A0A0D3EF81	Smr domain-containing protein.	Uncharacterized protein.	0.547
A0A0D3BGF4	A0A0D3B6F7	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	0.666
A0A0D3BGF4	A0A0D3BE53	Uncharacterized protein.	Smr domain-containing protein.	0.476
A0A0D3BGF4	A0A0D3BSF3	Uncharacterized protein.	Uncharacterized protein.	0.702
A0A0D3BGF4	A0A0D3C6W5	Uncharacterized protein.	Uncharacterized protein.	0.509