STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D3CAK9Uncharacterized protein. (235 aa)    
Predicted Functional Partners:
A0A0D3DZL6
RING-type domain-containing protein.
      
 0.564
A0A0D3DYJ1
Cupin type-1 domain-containing protein.
  
  
  0.557
A0A0D3D0B7
Uncharacterized protein.
  
  0.541
A0A0D3CM22
Uncharacterized protein.
  
  
  0.539
A0A0D3AGQ1
Uncharacterized protein.
  
  
  0.536
A0A0D3AED2
Dirigent protein; Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism.
  
  
  0.534
A0A0D2ZZN3
Uncharacterized protein.
  
     0.533
A0A0D3AXX7
Uncharacterized protein.
  
     0.533
A0A0D3DJC5
Uncharacterized protein.
  
  
  0.533
A0A0D3AXX3
Uncharacterized protein.
  
     0.531
Your Current Organism:
Brassica oleracea
NCBI taxonomy Id: 109376
Other names: B. oleracea var. oleracea, Brassica oleracea subsp. oleracea, Brassica oleracea var. oleracea
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