STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D3CB70Uncharacterized protein. (300 aa)    
Predicted Functional Partners:
A0A0D3A7F5
RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.
   
 0.994
A0A0D3DIY5
General transcription factor IIH subunit.
   
 0.994
A0A0D3C9M7
Uncharacterized protein.
    
 0.993
A0A0D3BM46
MAT1 domain-containing protein.
    
 0.991
A0A0D3AP91
Uncharacterized protein.
    
 0.990
A0A0D3CNV5
BSD domain-containing protein.
    
 0.990
A0A0D3DIM4
Helicase ATP-binding domain-containing protein.
    
 0.986
A0A0D3DJY0
Uncharacterized protein.
    
 0.986
A0A0D3CYG8
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
    
 0.985
A0A0D3D0F0
Protein kinase domain-containing protein.
    
 0.984
Your Current Organism:
Brassica oleracea
NCBI taxonomy Id: 109376
Other names: B. oleracea var. oleracea, Brassica oleracea subsp. oleracea, Brassica oleracea var. oleracea
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