Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
A0A0D3CMP1Protein kinase domain-containing protein. (587 aa)    
Predicted Functional Partners:
A0A0D3CH49
Uncharacterized protein.
   
 
 0.634
A0A0D3D184
Uncharacterized protein.
   
 
 0.630
A0A0D3D1C9
Uncharacterized protein.
   
 
 0.630
A0A0D3BWI2
F-box domain-containing protein.
      
 0.574
A0A0D3C1X2
Uncharacterized protein.
      
 0.568
A0A0D3AYK3
Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.
    
 0.521
A0A0D3B0B9
Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.
    
 0.521
A0A0D3BM46
MAT1 domain-containing protein.
    
 0.503
A0A0D3CYG8
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
    
 0.503
A0A0D3D0F0
Protein kinase domain-containing protein.
    
 0.503
Your Current Organism:
Brassica oleracea
NCBI taxonomy Id: 109376
Other names: B. oleracea var. oleracea, Brassica oleracea subsp. oleracea, Brassica oleracea var. oleracea
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