STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D3CNS3ANK_REP_REGION domain-containing protein. (163 aa)    
Predicted Functional Partners:
A0A0D3B7F8
RPN13_C domain-containing protein.
    
 0.962
A0A0D3B7G0
RPN13_C domain-containing protein.
    
 0.962
A0A0D3CY86
Ubiquitin carboxyl-terminal hydrolase.
    
 0.952
A0A0D3EC90
PDZ domain-containing protein.
   
 0.948
A0A0D3AFH6
Uncharacterized protein; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.
   
 0.943
A0A0D3AK24
AAA domain-containing protein; Belongs to the AAA ATPase family.
    
 0.943
A0A0D3B211
AAA domain-containing protein; Belongs to the AAA ATPase family.
    
 0.943
A0A0D3B9T4
AAA domain-containing protein; Belongs to the AAA ATPase family.
   
 0.943
A0A0D3CMK0
AAA domain-containing protein; Belongs to the AAA ATPase family.
   
 0.943
A0A0D3EDW0
AAA domain-containing protein; Belongs to the AAA ATPase family.
    
 0.943
Your Current Organism:
Brassica oleracea
NCBI taxonomy Id: 109376
Other names: B. oleracea var. oleracea, Brassica oleracea subsp. oleracea, Brassica oleracea var. oleracea
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