STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D3CSB1HD domain-containing protein. (710 aa)    
Predicted Functional Partners:
A0A0D3CAV0
50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
  
 
 0.912
A0A0D3BYX8
Inosine triphosphate pyrophosphatase; Pyrophosphatase that hydrolyzes non-canonical purine nucleotides such as inosine triphosphate (ITP), deoxyinosine triphosphate (dITP) or xanthosine 5'-triphosphate (XTP) to their respective monophosphate derivatives. The enzyme does not distinguish between the deoxy- and ribose forms. Probably excludes non-canonical purines from RNA and DNA precursor pools, thus preventing their incorporation into RNA and DNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family.
    
 0.909
A0A0D3CIR5
Uncharacterized protein.
   
 
 0.906
A0A0D3A3E9
Thioredoxin domain-containing protein.
     
  0.900
A0A0D3BS55
Uncharacterized protein.
    
 
 0.891
A0A0D3C450
Uncharacterized protein.
    
 
 0.891
A0A0D3B1V6
Uncharacterized protein.
    
   0.886
A0A0D2ZUI3
Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.
   
 
 0.880
A0A0D3B225
Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.
   
 
 0.880
A0A0D3A1Y6
Uncharacterized protein.
   
 
 0.876
Your Current Organism:
Brassica oleracea
NCBI taxonomy Id: 109376
Other names: B. oleracea var. oleracea, Brassica oleracea subsp. oleracea, Brassica oleracea var. oleracea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.