STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D3D921Uncharacterized protein. (557 aa)    
Predicted Functional Partners:
A0A0D3CZT6
Uncharacterized protein.
   
  
 0.598
A0A0D3DAE8
Uncharacterized protein.
      
 0.581
A0A0D3E947
Uncharacterized protein.
      
 0.559
A0A0D2ZT64
Uncharacterized protein.
      
 0.530
A0A0D3DE39
Uncharacterized protein.
      
 0.509
A0A0D3DS95
53EXOc domain-containing protein.
      
 0.509
A0A0D3ACJ2
Uncharacterized protein.
      
 0.489
A0A0D3CIU1
Uncharacterized protein.
      
 0.489
NTH1-2
Endonuclease III homolog; Bifunctional DNA N-glycosylase with associated apurinic/apyrimidinic (AP) lyase function that catalyzes the first step in base excision repair (BER), the primary repair pathway for the repair of oxidative DNA damage. The DNA N-glycosylase activity releases the damaged DNA base from DNA by cleaving the N-glycosidic bond, leaving an AP site. The AP lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination. Primarily recognizes and repairs oxidative base damage of pyrimidines.
      
 0.489
A0A0D3BAB0
Uncharacterized protein; Belongs to the RecA family.
      
 0.477
Your Current Organism:
Brassica oleracea
NCBI taxonomy Id: 109376
Other names: B. oleracea var. oleracea, Brassica oleracea subsp. oleracea, Brassica oleracea var. oleracea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.