STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D3DBT7Uncharacterized protein. (462 aa)    
Predicted Functional Partners:
A0A0D3A306
Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family.
   
 
 0.867
A0A0D3BM43
Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family.
   
 
 0.867
A0A0D3DH35
USP domain-containing protein; Belongs to the peptidase C19 family.
   
 
 0.867
A0A0D3C9W5
Uncharacterized protein.
  
 
 
0.709
A0A0D3D4U5
Uncharacterized protein.
  
 
 
0.564
A0A0D3D9N0
RRM domain-containing protein.
      
 0.558
A0A0D3AI25
Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.
      
 0.515
A0A0D3EH45
EF-hand domain-containing protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.
      
 0.515
A0A0D3BFD3
Uncharacterized protein.
   
 
 0.433
Your Current Organism:
Brassica oleracea
NCBI taxonomy Id: 109376
Other names: B. oleracea var. oleracea, Brassica oleracea subsp. oleracea, Brassica oleracea var. oleracea
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