STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D3DI24Uncharacterized protein. (167 aa)    
Predicted Functional Partners:
A0A0D2ZW69
Uncharacterized protein.
   
 
 0.989
NCS6
Cytoplasmic tRNA 2-thiolation protein 1; Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Directly binds tRNAs and probably acts by catalyzing adenylation of tRNAs, an intermediate required for 2-thiolation. It is unclear whether it acts as a sulfurtransferase that transfers sulfur from thiocarboxylated URM1 onto the uridine of tRNAs at wobble position.
   
 
 0.989
A0A0D3D124
Uncharacterized protein.
   
 
 0.989
A0A0D3D509
ATP_bind_3 domain-containing protein.
   
 
 0.985
A0A0D3A3X1
M20_dimer domain-containing protein.
    
   0.932
A0A0D3BNY8
Uncharacterized protein; Belongs to the DEAD box helicase family.
   
    0.867
A0A0D3DG51
Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.
   
    0.834
A0A0D3DMX3
Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.
   
    0.834
A0A0D3EFN9
FtsJ domain-containing protein.
   
    0.834
A0A0D3C775
Uncharacterized protein.
   
    0.827
Your Current Organism:
Brassica oleracea
NCBI taxonomy Id: 109376
Other names: B. oleracea var. oleracea, Brassica oleracea subsp. oleracea, Brassica oleracea var. oleracea
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