STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D3DKY8Secretory carrier-associated membrane protein; Probably involved in membrane trafficking. Belongs to the SCAMP family. (265 aa)    
Predicted Functional Partners:
A0A0D3ABN7
Uncharacterized protein.
      
 0.514
A0A0D3A6S0
Lipase_GDSL domain-containing protein; Belongs to the 'GDSL' lipolytic enzyme family.
      
 0.489
A0A0D3DG42
Cytochrome b561 domain-containing protein.
      
 0.461
A0A0D3E3P6
Uncharacterized protein.
      
 0.453
A0A0D3C4E2
MFS domain-containing protein; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.
      
 0.440
A0A0D3EA74
Fe2OG dioxygenase domain-containing protein.
      
 0.424
Your Current Organism:
Brassica oleracea
NCBI taxonomy Id: 109376
Other names: B. oleracea var. oleracea, Brassica oleracea subsp. oleracea, Brassica oleracea var. oleracea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.