A0A0D3DM31 protein (Brassica oleracea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0D3DM31

Uncharacterized protein. (125 aa)

Predicted Functional Partners:

A0A0D3A7P8

0.555

A0A0D3AJY9

0.555

A0A0D3EA35

0.549

A0A0D3EI42

0.540

A0A0D3B9R3

0.519

A0A0D3CAP0

0.515

A0A0D3A4B2

0.508

A0A0D3A4B3

0.508

A0A0D3BF13

0.499

A0A0D3E274

0.499

Your Current Organism:

Brassica oleracea

NCBI taxonomy Id: 109376
Other names: B. oleracea var. oleracea, Brassica oleracea subsp. oleracea, Brassica oleracea var. oleracea

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D3A4B2	A0A0D3DM31	Uncharacterized protein.	Uncharacterized protein.	0.508
A0A0D3A4B3	A0A0D3DM31	HTH TFE/IIEalpha-type domain-containing protein.	Uncharacterized protein.	0.508
A0A0D3A7P8	A0A0D3AJY9	Uncharacterized protein.	Uncharacterized protein.	0.586
A0A0D3A7P8	A0A0D3DM31	Uncharacterized protein.	Uncharacterized protein.	0.555
A0A0D3AJY9	A0A0D3A7P8	Uncharacterized protein.	Uncharacterized protein.	0.586
A0A0D3AJY9	A0A0D3DM31	Uncharacterized protein.	Uncharacterized protein.	0.555
A0A0D3B9R3	A0A0D3BF13	Uncharacterized protein.	Ribosomal_L18e/L15P domain-containing protein.	0.553
A0A0D3B9R3	A0A0D3DM31	Uncharacterized protein.	Uncharacterized protein.	0.519
A0A0D3B9R3	A0A0D3E274	Uncharacterized protein.	Ribosomal_L18e/L15P domain-containing protein.	0.553
A0A0D3B9R3	A0A0D3EI42	Uncharacterized protein.	Uncharacterized protein.	0.581
A0A0D3BF13	A0A0D3B9R3	Ribosomal_L18e/L15P domain-containing protein.	Uncharacterized protein.	0.553
A0A0D3BF13	A0A0D3DM31	Ribosomal_L18e/L15P domain-containing protein.	Uncharacterized protein.	0.499
A0A0D3BF13	A0A0D3EI42	Ribosomal_L18e/L15P domain-containing protein.	Uncharacterized protein.	0.558
A0A0D3CAP0	A0A0D3DM31	Uncharacterized protein.	Uncharacterized protein.	0.515
A0A0D3DM31	A0A0D3A4B2	Uncharacterized protein.	Uncharacterized protein.	0.508
A0A0D3DM31	A0A0D3A4B3	Uncharacterized protein.	HTH TFE/IIEalpha-type domain-containing protein.	0.508
A0A0D3DM31	A0A0D3A7P8	Uncharacterized protein.	Uncharacterized protein.	0.555
A0A0D3DM31	A0A0D3AJY9	Uncharacterized protein.	Uncharacterized protein.	0.555
A0A0D3DM31	A0A0D3B9R3	Uncharacterized protein.	Uncharacterized protein.	0.519
A0A0D3DM31	A0A0D3BF13	Uncharacterized protein.	Ribosomal_L18e/L15P domain-containing protein.	0.499