STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D3E0H0Pectate lyase. (412 aa)    
Predicted Functional Partners:
A0A0D3BZY1
Uncharacterized protein.
     
 0.728
A0A0D3CMI6
Pectinesterase; In the C-terminal section; belongs to the pectinesterase family.
  
 
  0.716
A0A0D3ALW7
Pectinesterase.
  
 
 0.712
A0A0D3EDZ7
Pectinesterase.
  
 
 0.712
A0A0D3AK01
Pectinesterase.
  
 
 0.711
A0A0D3E009
Pectinesterase.
  
 
  0.709
A0A0D3AK94
Pectinesterase; Acts in the modification of cell walls via demethylesterification of cell wall pectin. In the C-terminal section; belongs to the pectinesterase family.
     
 0.678
A0A0D3BBJ0
Uncharacterized protein.
     
 0.674
A0A0D3CJS7
Uncharacterized protein.
     
 0.674
A0A0D3CJS9
Uncharacterized protein.
     
 0.674
Your Current Organism:
Brassica oleracea
NCBI taxonomy Id: 109376
Other names: B. oleracea var. oleracea, Brassica oleracea subsp. oleracea, Brassica oleracea var. oleracea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.