STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D3E3H7WD_REPEATS_REGION domain-containing protein. (473 aa)    
Predicted Functional Partners:
A0A0D3B8G2
WD_REPEATS_REGION domain-containing protein.
   
 
 0.861
A0A0D3BG03
Brix domain-containing protein.
  
    0.810
A0A0D3E1S0
Brix domain-containing protein.
  
    0.809
A0A0D3ADT7
Uncharacterized protein.
   
   0.803
A0A0D3CAH7
WD_REPEATS_REGION domain-containing protein.
   
  
 0.794
A0A0D3DPT5
WD_REPEATS_REGION domain-containing protein.
   
  
 0.794
A0A0D3EDR9
Uncharacterized protein.
   
   0.794
A0A0D3B152
Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.
   
 
 0.793
A0A0D3B6T0
Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.
   
 
 0.789
A0A0D3BQ09
WD_REPEATS_REGION domain-containing protein.
   
 
 0.789
Your Current Organism:
Brassica oleracea
NCBI taxonomy Id: 109376
Other names: B. oleracea var. oleracea, Brassica oleracea subsp. oleracea, Brassica oleracea var. oleracea
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