STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D3E3U1RHOMBOID-like protein. (315 aa)    
Predicted Functional Partners:
A0A0D3DCA2
Uncharacterized protein.
   
 
 0.686
A0A0D3E0Z8
Uncharacterized protein.
   
 
 0.686
A0A0D3CBA0
Rhomboid domain-containing protein.
      
 0.540
A0A0D3E5F0
ZnMc domain-containing protein.
      
 0.489
A0A0D3BQ01
ZnMc domain-containing protein.
      
 0.487
A0A0D3E2I2
F-box domain-containing protein.
   
  
 0.483
A0A0D3CCW1
ZnMc domain-containing protein.
      
 0.474
A0A0D3CWB1
Uncharacterized protein.
  
    0.472
A0A0D3EFW4
5-formyltetrahydrofolate cyclo-ligase; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.
  
    0.472
A0A0D3AZW3
Uncharacterized protein.
      
 0.453
Your Current Organism:
Brassica oleracea
NCBI taxonomy Id: 109376
Other names: B. oleracea var. oleracea, Brassica oleracea subsp. oleracea, Brassica oleracea var. oleracea
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.