A0A0D3E7B0 protein (Brassica oleracea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0D3E7B0

Uncharacterized protein. (229 aa)

Predicted Functional Partners:

A0A0D3DCA2

0.985

A0A0D3E0Z8

0.985

A0A0D3B3T7

0.574

A0A0D3DWW7

0.567

A0A0D2ZS52

0.558

A0A0D3AMR5

0.558

A0A0D3CAV0

0.521

A0A0D3A331

0.518

A0A0D3DH14

0.518

A0A0D3A3P3

0.498

Your Current Organism:

Brassica oleracea

NCBI taxonomy Id: 109376
Other names: B. oleracea var. oleracea, Brassica oleracea subsp. oleracea, Brassica oleracea var. oleracea

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0D2ZS52	A0A0D3DCA2	COX3 domain-containing protein.	Uncharacterized protein.	0.577
A0A0D2ZS52	A0A0D3E0Z8	COX3 domain-containing protein.	Uncharacterized protein.	0.577
A0A0D2ZS52	A0A0D3E7B0	COX3 domain-containing protein.	Uncharacterized protein.	0.558
A0A0D3A331	A0A0D3CAV0	SRP54 domain-containing protein.	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.855
A0A0D3A331	A0A0D3DCA2	SRP54 domain-containing protein.	Uncharacterized protein.	0.560
A0A0D3A331	A0A0D3DH14	SRP54 domain-containing protein.	SRP54 domain-containing protein.	0.900
A0A0D3A331	A0A0D3E0Z8	SRP54 domain-containing protein.	Uncharacterized protein.	0.560
A0A0D3A331	A0A0D3E7B0	SRP54 domain-containing protein.	Uncharacterized protein.	0.518
A0A0D3A3P3	A0A0D3CAV0	Uncharacterized protein.	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.489
A0A0D3A3P3	A0A0D3E7B0	Uncharacterized protein.	Uncharacterized protein.	0.498
A0A0D3AMR5	A0A0D3DCA2	Uncharacterized protein.	Uncharacterized protein.	0.551
A0A0D3AMR5	A0A0D3E0Z8	Uncharacterized protein.	Uncharacterized protein.	0.552
A0A0D3AMR5	A0A0D3E7B0	Uncharacterized protein.	Uncharacterized protein.	0.558
A0A0D3B3T7	A0A0D3DCA2	Uncharacterized protein.	Uncharacterized protein.	0.548
A0A0D3B3T7	A0A0D3E0Z8	Uncharacterized protein.	Uncharacterized protein.	0.550
A0A0D3B3T7	A0A0D3E7B0	Uncharacterized protein.	Uncharacterized protein.	0.574
A0A0D3CAV0	A0A0D3A331	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	SRP54 domain-containing protein.	0.855
A0A0D3CAV0	A0A0D3A3P3	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	Uncharacterized protein.	0.489
A0A0D3CAV0	A0A0D3DH14	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	SRP54 domain-containing protein.	0.855
A0A0D3CAV0	A0A0D3E7B0	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	Uncharacterized protein.	0.521