STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D3EF25FRIGIDA-like protein; Belongs to the Frigida family. (445 aa)    
Predicted Functional Partners:
A0A0D3B4S0
Uncharacterized protein.
  
   
 0.670
A0A0D3BTL8
Uncharacterized protein.
  
   
 0.627
A0A0D3ATZ3
BED-type domain-containing protein.
    
 
 0.583
A0A0D3CF26
BED-type domain-containing protein.
    
 
 0.583
A0A0D3BFY5
Uncharacterized protein.
      
 0.518
A0A0D3EA00
FRIGIDA-like protein; Belongs to the Frigida family.
  
 
 
0.518
A0A0D3BSB9
C3H1-type domain-containing protein.
      
 0.514
A0A0D3DDE8
Uncharacterized protein.
  
     0.504
A0A0D3A7G1
DYW_deaminase domain-containing protein.
      
 0.481
A0A0D3CW32
Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
  
     0.481
Your Current Organism:
Brassica oleracea
NCBI taxonomy Id: 109376
Other names: B. oleracea var. oleracea, Brassica oleracea subsp. oleracea, Brassica oleracea var. oleracea
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