E0L32_000762 protein (Phialemoniopsis curvata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

E0L32_000762

Glyco_transf_28 domain-containing protein. (851 aa)

Predicted Functional Partners:

E0L32_011029

0.509

E0L32_003240

0.473

E0L32_003920

0.461

E0L32_000846

0.459

E0L32_008687

0.442

E0L32_001746

0.440

E0L32_001834

0.428

E0L32_003219

0.415

Your Current Organism:

Phialemoniopsis curvata

NCBI taxonomy Id: 1093900
Other names: Bionectriaceae sp. NRRL 46124, CBS 490.82, CDC 45-394-63, P. curvata, Phialemoniopsis curvata (W. Gams & W. B. Cooke) H. Perdomo, D. Garca, Gen, Cano & Guarro 2013, Phialemonium curvatum, Xylariales sp. HP-2011b

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
E0L32_000762	E0L32_000846	A0A507ANZ8	A0A507B5N7	Glyco_transf_28 domain-containing protein.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.459
E0L32_000762	E0L32_001746	A0A507ANZ8	A0A507AU08	Glyco_transf_28 domain-containing protein.	Uncharacterized protein.	0.440
E0L32_000762	E0L32_001834	A0A507ANZ8	A0A507ATK3	Glyco_transf_28 domain-containing protein.	Uncharacterized protein.	0.428
E0L32_000762	E0L32_003219	A0A507ANZ8	A0A507BJ74	Glyco_transf_28 domain-containing protein.	S5A_REDUCTASE domain-containing protein.	0.415
E0L32_000762	E0L32_003240	A0A507ANZ8	A0A507B4D6	Glyco_transf_28 domain-containing protein.	Uncharacterized protein.	0.473
E0L32_000762	E0L32_003920	A0A507ANZ8	A0A507BGZ4	Glyco_transf_28 domain-containing protein.	Cupin type-1 domain-containing protein.	0.461
E0L32_000762	E0L32_008687	A0A507ANZ8	A0A507AKU4	Glyco_transf_28 domain-containing protein.	UDPG_MGDP_dh_C domain-containing protein.	0.442
E0L32_000762	E0L32_011029	A0A507ANZ8	A0A507AQB3	Glyco_transf_28 domain-containing protein.	Rab-GAP TBC domain-containing protein.	0.509
E0L32_000846	E0L32_000762	A0A507B5N7	A0A507ANZ8	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Glyco_transf_28 domain-containing protein.	0.459
E0L32_001746	E0L32_000762	A0A507AU08	A0A507ANZ8	Uncharacterized protein.	Glyco_transf_28 domain-containing protein.	0.440
E0L32_001834	E0L32_000762	A0A507ATK3	A0A507ANZ8	Uncharacterized protein.	Glyco_transf_28 domain-containing protein.	0.428
E0L32_003219	E0L32_000762	A0A507BJ74	A0A507ANZ8	S5A_REDUCTASE domain-containing protein.	Glyco_transf_28 domain-containing protein.	0.415
E0L32_003240	E0L32_000762	A0A507B4D6	A0A507ANZ8	Uncharacterized protein.	Glyco_transf_28 domain-containing protein.	0.473
E0L32_003920	E0L32_000762	A0A507BGZ4	A0A507ANZ8	Cupin type-1 domain-containing protein.	Glyco_transf_28 domain-containing protein.	0.461
E0L32_008687	E0L32_000762	A0A507AKU4	A0A507ANZ8	UDPG_MGDP_dh_C domain-containing protein.	Glyco_transf_28 domain-containing protein.	0.442
E0L32_011029	E0L32_000762	A0A507AQB3	A0A507ANZ8	Rab-GAP TBC domain-containing protein.	Glyco_transf_28 domain-containing protein.	0.509

Network Stats

number of nodes:

11

number of edges:

26

average node degree:

4.73

avg. local clustering coefficient:

0.778

expected number of edges:

16

PPI enrichment p-value:

0.0092

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006412

Translation

10 of 103

1.12

1.47

2.90e-08

GO:0010467

Gene expression

11 of 176

0.93

1.08

2.90e-08

GO:0034641

Cellular nitrogen compound metabolic process

11 of 438

0.54

0.47

6.82e-05

GO:0044238

Primary metabolic process

11 of 648

0.37

0.31

0.0037

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0003735

Structural constituent of ribosome

10 of 55

1.4

2.45

4.59e-11

GO:0019843

rRNA binding

4 of 41

1.13

0.63

0.0270

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0005840

Ribosome

10 of 58

1.37

2.42

1.53e-11

GO:0005622

Intracellular anatomical structure

11 of 634

0.38

0.33

0.0011

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:169

rRNA-binding, and RF-1 domain

6 of 14

1.77

2.98

2.56e-08

CL:172

Ribosome

5 of 9

1.88

2.84

3.13e-07

CL:75

Ribosome

10 of 61

1.35

2.33

1.96e-11

CL:68

Ribosome, and Regulation of translation

11 of 72

1.32

2.31

2.18e-12

CL:77

Ribosome

4 of 45

1.09

0.78

0.0058

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

lje03010

Ribosome

10 of 55

1.4

2.52

7.95e-12

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0005840

Ribosome

7 of 45

1.33

1.77

6.43e-07

GOCC:0043232

Intracellular non-membrane-bounded organelle

8 of 99

1.05

1.17

2.88e-06

GOCC:0015935

Small ribosomal subunit

3 of 12

1.54

1.13

0.0031

GOCC:0043229

Intracellular organelle

10 of 167

0.91

1.0

6.41e-07

GOCC:0005622

Intracellular

11 of 621

0.39

0.33

0.0018

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0689

Ribosomal protein

10 of 57

1.38

2.43

2.18e-11

KW-0699

rRNA-binding

4 of 39

1.15

0.79

0.0078

Enrichment display settings

Enrichment analysis is still ongoing, please wait ...

Server load: low (18%) [HD]

Permalink

Network

Fusion

Experiments

Cooccurrence

Databases

Neighborhood

Textmining

Coexpression

© STRING Consortium 2024

Credits

Access

Info

About