STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
P40_00220C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (649 aa)    
Predicted Functional Partners:
P40_00215
C4-dicarboxylate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
  0.991
P40_00235
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.831
P40_07950
C4-dicarboxylate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.819
P40_13485
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.819
P40_13495
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.819
P40_16340
C4-dicarboxylate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.819
P40_16240
C4-dicarboxylate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.782
P40_00225
3-oxoadipate CoA-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.752
P40_00230
3-oxoadipate CoA-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.752
P40_12020
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.743
Your Current Organism:
Alcanivorax xenomutans
NCBI taxonomy Id: 1094342
Other names: A. xenomutans, Alcanivorax sp. JC109, Alcanivorax sp. JC261, Alcanivorax xenomutans Rahul et al. 2014, KCTC 23751, NBRC 108843, strain JC109
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.