STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
P40_14570Exodeoxyribonuclease V subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology. (642 aa)    
Predicted Functional Partners:
P40_14560
Exodeoxyribonuclease V subunit gamma; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
P40_14565
Exodeoxyribonuclease V subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
P40_00010
DNA polymerase III subunit beta; Binds the polymerase to DNA and acts as a sliding clamp; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.887
P40_03740
DNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.781
P40_04585
DNA primase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.763
P40_15195
ATP-dependent DNA helicase RecQ; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.757
P40_05430
DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.728
P40_16195
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.702
P40_14790
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.695
P40_05910
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.687
Your Current Organism:
Alcanivorax xenomutans
NCBI taxonomy Id: 1094342
Other names: A. xenomutans, Alcanivorax sp. JC109, Alcanivorax sp. JC261, Alcanivorax xenomutans Rahul et al. 2014, KCTC 23751, NBRC 108843, strain JC109
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.