STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trbJP-type conjugative transfer protein TrbJ. (234 aa)    
Predicted Functional Partners:
trbE
Conjugal transfer protein TrbE.
 
  
 0.994
trbC
Conjugal transfer protein TrbC.
 
  
 0.978
trbD
Conjugal transfer protein TrbD.
 
  
 0.976
trbB
P-type conjugative transfer ATPase TrbB.
 
  
 0.972
vblB2
Type IV secretion protein VblB2.
    
 0.901
AGF76427.1
Hypothetical protein.
     
  0.900
traG
Conjugal transfer protein TraG/VirD4.
 
   
 0.785
traC
Conjugal transfer ATP-binding protein TraC.
 
     0.681
trwE
TrwE protein.
 
   
 0.641
virB10
Type IV secretion system protein VirB10.
 
   
 0.627
Your Current Organism:
Bartonella vinsonii berkhoffii
NCBI taxonomy Id: 1094497
Other names: B. vinsonii subsp. berkhoffii str. Winnie, Bartonella vinsonii subsp. berkhoffii str. Winnie, Bartonella vinsonii subsp. berkhoffii strain Winnie
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.