STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tsac_0067ABC-type transporter, integral membrane subunit; PFAM: Bacterial transport system permease protein; KEGG: txy:Thexy_1964 ABC transporter transmembrane protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. (329 aa)    
Predicted Functional Partners:
Tsac_0066
ABC transporter related protein; KEGG: txy:Thexy_1963 iron-chelate-transporting ATPase; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core.
 
 0.999
Tsac_0068
ABC-type transporter, periplasmic subunit; PFAM: Periplasmic binding protein; KEGG: txy:Thexy_1965 ABC transporter periplasmic protein.
 
 
 0.998
Tsac_2021
KEGG: txy:Thexy_1478 hypothetical protein.
  
 
 0.918
cobD
Cobalamin biosynthesis protein cbiB; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group.
 
   
 0.851
cobQ
Cobyric acid synthase; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily.
 
  
 0.844
cbiA
Cobyrinic acid A,C-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family.
     
 0.831
cobS
Cobalamin synthase; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family.
 
  
 0.830
Tsac_0059
Cobalbumin biosynthesis protein; PFAM: Cobinamide kinase/cobinamide phosphate guanyltransferase; KEGG: txy:Thexy_1956 adenosylcobinamide-phosphate guanylyltransferase.
 
   
 0.819
Tsac_0060
PFAM: Aminotransferase, class I/II; KEGG: txy:Thexy_1957 aminotransferase class I and II.
  
  
 0.800
Tsac_0061
KEGG: txy:Thexy_1958 hypothetical protein.
       0.788
Your Current Organism:
Thermoanaerobacterium saccharolyticum
NCBI taxonomy Id: 1094508
Other names: T. saccharolyticum JW/SL-YS485, Thermoanaerobacterium saccharolyticum JW/SL-YS485, Thermoanaerobacterium saccharolyticum str. JW/SL-YS485, Thermoanaerobacterium saccharolyticum strain JW/SL-YS485, Thermoanaerobacterium sp. (strain JW/SL YS485)
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