STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tsac_0089ABC-type transporter, integral membrane subunit; PFAM: ABC-3; KEGG: txy:Thexy_1987 ABC transporter transmembrane protein. (266 aa)    
Predicted Functional Partners:
Tsac_0087
PFAM: ABC transporter metal-binding lipoprotein; KEGG: txy:Thexy_1985 ABC-type metal ion transporter, periplasmic subunit; Belongs to the bacterial solute-binding protein 9 family.
 
 0.999
Tsac_0088
ABC transporter related protein; KEGG: txy:Thexy_1986 phosphonate-transporting ATPase; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core.
 0.999
Tsac_0086
Ferric uptake regulator, Fur family; PFAM: Ferric-uptake regulator; KEGG: txy:Thexy_1984 ferric uptake regulator, Fur family.
  
  
 0.844
Tsac_2654
KEGG: txy:Thexy_0651 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine; PFAM: Binding-protein-dependent transport systems inner membrane component.
   
 
 0.582
Tsac_0252
KEGG: txy:Thexy_2126 cobalt ABC transporter, inner membrane subunit CbiQ; TIGRFAM: Cobalt ABC transporter CbiQ, permease subunit; PFAM: Cobalt transport protein.
  
  
 0.475
Tsac_0812
KEGG: txy:Thexy_0213 iron (metal) dependent repressor, DtxR family; PFAM: Iron dependent repressor; SMART: Iron dependent repressor.
  
  
 0.466
Tsac_0085
KEGG: txy:Thexy_1983 phosphoesterase PA-phosphatase relted protein; PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; SMART: Phosphatidic acid phosphatase type 2/haloperoxidase.
       0.464
birA
BirA bifunctional protein, biotin operon repressor, biotin/acetyl-CoA-carboxylase ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
       0.453
Tsac_0520
PFAM: Natural resistance-associated macrophage protein; KEGG: txy:Thexy_2383 natural resistance-associated macrophage protein.
   
  
 0.438
mntH
Manganese transport protein mntH; H(+)-stimulated, divalent metal cation uptake system. Belongs to the NRAMP family.
   
  
 0.438
Your Current Organism:
Thermoanaerobacterium saccharolyticum
NCBI taxonomy Id: 1094508
Other names: T. saccharolyticum JW/SL-YS485, Thermoanaerobacterium saccharolyticum JW/SL-YS485, Thermoanaerobacterium saccharolyticum str. JW/SL-YS485, Thermoanaerobacterium saccharolyticum strain JW/SL-YS485, Thermoanaerobacterium sp. (strain JW/SL YS485)
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